Code

• Code for data acquisition and analysis

Data processing, stimulus generation, and calibration

• matlabPAC_general
• DRC stimuli (CGC_DRC)

2P data analysis

• Non-Rigid Motion Correction (MATLAB): NoRMCorre
• Analysis pipeline (MATLAB): matlabPAC_process2P
• Neuropil correction (Python: fissa_env_legacy)

Widefield analysis

• pyFluo

ScanImage user function

User function

Ephus user functions

Custom user functions

Data standardization

• 2P to NWB (data2nwb)
• Example DANDIset dataset with pupillometry

Misc: ICEphys / ABF to NWB

• icephys_abf2nwb